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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15148 and 15149 are separated by 250 nucleotides
15149 and 15150 are separated by 81 nucleotides
15150 and 15151 are separated by 240 nucleotides
15151 and 15152 are separated by 220 nucleotides
mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115,933 to 117,029
15148
mRNA_6781: 15149 - Hypothetical Protein, at 117,280 to 117,859
15149
mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117,941 to 121,019
15150
mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121,260 to 121,958
15151
mRNA_6784: 15152 - Hypothetical Protein, at 122,179 to 122,986
15152
Group
Condition
mRNA
_6780
mRNA
_6781
mRNA
_6782
mRNA
_6783
mRNA
_6784
15148
15149
15150
15151
15152
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.1
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.6
+0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.0
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.3
-0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.6
+0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.1
-0.8
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
+0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
+0.0
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.5
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.4
+0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.2
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.5
+0.2
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.9
-0.2
+0.4
growth on ypd
YPD
N.D.
N.D.
+0.9
+0.7
-0.4
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