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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15150 and 15151 are separated by 240 nucleotides
15151 and 15152 are separated by 220 nucleotides
15152 and 15153 are separated by 286 nucleotides
15153 and 15154 are separated by 349 nucleotides
mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117,941 to 121,019
15150
mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121,260 to 121,958
15151
mRNA_6784: 15152 - Hypothetical Protein, at 122,179 to 122,986
15152
mRNA_6785: 15153 - K03860 PIGQ, GPI1 phosphatidylinositol glycan, class Q, at 123,273 to 125,638
15153
mRNA_6786: 15154 - K14784 CMS1 protein CMS1, at 125,988 to 127,224
15154
Group
Condition
mRNA
_6782
mRNA
_6783
mRNA
_6784
mRNA
_6785
mRNA
_6786
15150
15151
15152
15153
15154
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
-1.0
+0.3
-2.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.3
-0.4
-1.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
-0.7
+0.1
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.2
-0.3
-0.2
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.4
+0.2
-2.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.0
-0.5
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.8
+0.0
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.0
-0.1
+0.1
-1.5
auxotrophy
Dropout Complete
-0.3
+0.5
-0.3
+0.3
-1.4
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.4
-0.4
-0.0
-0.3
growth on oleic acid
YNB Oleic Acid
+0.5
+0.2
-0.2
-0.1
-1.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.0
-0.8
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
+0.4
+0.2
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
-0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
+0.2
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.2
+0.3
+0.2
+0.2
-0.9
auxotrophy
YNB Glucose
-0.5
+0.4
+0.1
+0.2
-0.2
growth on ypd
YPD
+0.9
+0.7
-0.4
-0.3
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.6
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.3
-0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.9
-0.2
+0.4
+0.0
+1.3
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