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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15152 and 15153 are separated by 286 nucleotides
15153 and 15154 are separated by 349 nucleotides
15154 and 15155 are separated by 143 nucleotides
15155 and 15156 are separated by 169 nucleotides
mRNA_6784: 15152 - Hypothetical Protein, at 122,179 to 122,986
15152
mRNA_6785: 15153 - K03860 PIGQ, GPI1 phosphatidylinositol glycan, class Q, at 123,273 to 125,638
15153
mRNA_6786: 15154 - K14784 CMS1 protein CMS1, at 125,988 to 127,224
15154
mRNA_6787: 15155 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 127,368 to 127,805
15155
mRNA_6788: 15156 - K05853 ATP2A Ca2+ transporting ATPase, sarcoplasmic/endoplasmic reticulum, at 127,975 to 131,651
15156
Group
Condition
mRNA
_6784
mRNA
_6785
mRNA
_6786
mRNA
_6787
mRNA
_6788
15152
15153
15154
15155
15156
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
+0.3
-2.7
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.4
-1.8
N.D.
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
-2.2
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.0
-1.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.1
-1.4
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-0.9
N.D.
-0.2
auxotrophy
Dropout Complete
-0.3
+0.3
-1.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-1.5
N.D.
+0.3
growth on ypd
YPD
-0.4
-0.3
-0.6
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-0.6
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-1.1
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
-0.8
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
+0.2
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.0
-0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.8
+0.2
+0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.9
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.3
-0.4
N.D.
-0.4
auxotrophy
YNB Glucose
+0.1
+0.2
-0.2
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.3
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
+0.6
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
+1.3
N.D.
-0.2
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