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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15157 and 15158 are separated by 524 nucleotides
15158 and 15159 are separated by 92 nucleotides
15159 and 15160 are separated by 367 nucleotides
15160 and 15161 are separated by 107 nucleotides
mRNA_6789: 15157 - KOG3335 Predicted coiled-coil protein, at 131,775 to 132,958
15157
mRNA_6790: 15158 - K00671 E2.3.1.97, NMT glycylpeptide N-tetradecanoyltransferase, at 133,483 to 136,016
15158
mRNA_6791: 15159 - K00888 PI4KA phosphatidylinositol 4-kinase A, at 136,109 to 143,352
15159
mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143,720 to 144,685
15160
mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144,793 to 148,155
15161
Group
Condition
mRNA
_6789
mRNA
_6790
mRNA
_6791
mRNA
_6792
mRNA
_6793
15157
15158
15159
15160
15161
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.5
-0.0
-3.3
growth on ypd
YPD
N.D.
N.D.
-1.6
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.7
-0.2
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.9
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.8
-0.0
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.7
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.9
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.7
+0.2
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.5
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.6
-0.1
+0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
+0.3
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
+0.3
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.6
+0.5
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.3
+1.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+1.4
+0.3
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+1.2
+0.6
+1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.3
+0.7
+1.6
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