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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15159 and 15160 are separated by 367 nucleotides
15160 and 15161 are separated by 107 nucleotides
15161 and 15162 are separated by 316 nucleotides
15162 and 15163 are separated by 104 nucleotides
mRNA_6791: 15159 - K00888 PI4KA phosphatidylinositol 4-kinase A, at 136,109 to 143,352
15159
mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143,720 to 144,685
15160
mRNA_6793: 15161 - KOG2375 Protein interacting with poly(A)-binding protein, at 144,793 to 148,155
15161
mRNA_6794: 15162 - K10773 NTH endonuclease III, at 148,472 to 150,085
15162
mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150,190 to 154,769
15163
Group
Condition
mRNA
_6791
mRNA
_6792
mRNA
_6793
mRNA
_6794
mRNA
_6795
15159
15160
15161
15162
15163
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.0
-3.3
+0.7
+0.0
growth on ypd
YPD
-1.6
-0.2
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.2
-0.9
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.2
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.0
-0.7
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.9
+0.1
+0.1
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.2
+0.0
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.2
-0.0
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
+0.2
-0.7
-0.4
auxotrophy
Dropout Complete
-0.5
+0.2
+0.1
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.0
+0.5
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
+0.1
+0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.5
-0.3
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.4
+0.4
+0.2
+0.1
auxotrophy
YNB Glucose
+0.4
+0.3
+0.3
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
+0.9
+0.8
+0.0
growth on oleic acid
YNB Glucose
+0.6
+0.5
+0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
+1.5
+0.8
-0.1
growth on oleic acid
YNB Oleic Acid
+1.2
+0.6
+1.0
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+1.4
+0.3
+0.4
+0.9
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
+0.7
+1.6
+1.0
-0.1
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