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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15163 and 15164 are separated by 780 nucleotides
15164 and 15165 are separated by 237 nucleotides
15165 and 15166 are separated by 589 nucleotides
15166 and 15167 are separated by 1442 nucleotides
mRNA_6795: 15163 - KOG3548 DNA damage checkpoint protein RHP9/CRB2/53BP1, at 150,190 to 154,769
15163
mRNA_6796: 15164 - Hypothetical Protein, at 155,550 to 156,068
15164
mRNA_6797: 15165 - BLAST Formin-like protein 3 [Rhizoctonia solani], at 156,306 to 160,746
15165
mRNA_6798: 15166 - Hypothetical Protein, at 161,336 to 161,885
15166
mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163,328 to 165,722
15167
Group
Condition
mRNA
_6795
mRNA
_6796
mRNA
_6797
mRNA
_6798
mRNA
_6799
15163
15164
15165
15166
15167
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.3
-0.7
-2.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-1.2
+0.6
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.5
-0.6
-0.2
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
+0.1
-0.3
-1.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.5
-0.3
-0.5
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.2
+0.2
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.7
-0.5
+0.8
-1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-0.2
-0.6
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
+0.1
-0.2
-0.8
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.2
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
-0.0
-0.7
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.2
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.1
-0.7
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.4
+0.3
-0.6
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
-0.1
-0.0
+1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
-0.0
-0.1
+1.6
growth on ypd
YPD
+0.2
-0.2
+0.1
-0.2
+1.5
auxotrophy
Dropout Complete
+0.0
+0.4
+0.2
-0.3
+1.8
auxotrophy
YNB Glucose
-0.1
+0.3
+0.1
+0.0
+1.9
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