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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15166 and 15167 are separated by 1442 nucleotides
15167 and 15168 are separated by 168 nucleotides
15168 and 15169 are separated by 878 nucleotides
15169 and 15170 are separated by 286 nucleotides
mRNA_6798: 15166 - Hypothetical Protein, at 161,336 to 161,885
15166
mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163,328 to 165,722
15167
mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165,891 to 167,581
15168
mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168,460 to 170,274
15169
mRNA_6802: 15170 - Hypothetical Protein, at 170,561 to 172,312
15170
Group
Condition
mRNA
_6798
mRNA
_6799
mRNA
_6800
mRNA
_6801
mRNA
_6802
15166
15167
15168
15169
15170
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.7
-1.5
-0.6
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.9
-2.2
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-1.8
-1.7
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
-1.9
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-2.2
-0.2
+0.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-1.5
-0.9
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.8
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.7
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
+0.0
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.5
-0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.9
-1.4
+2.3
+0.3
growth on oleic acid
YNB Glucose
-0.5
+0.2
-0.3
+0.6
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.4
+0.6
-0.3
growth on ypd
YPD
-0.2
+1.5
-0.4
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.7
+0.8
-0.1
+1.0
+0.3
growth on oleic acid
YNB Oleic Acid
-0.6
+0.0
+0.5
+1.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+1.2
-0.3
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+1.6
-0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.8
+1.6
+0.4
auxotrophy
YNB Glucose
+0.0
+1.9
+0.2
+0.4
+0.3
auxotrophy
Dropout Complete
-0.3
+1.8
+1.0
+0.8
+0.2
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