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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15169 and 15170 are separated by 286 nucleotides
15170 and 15171 are separated by 91 nucleotides
15171 and 15172 are separated by 173 nucleotides
15172 and 15173 are separated by 118 nucleotides
mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168,460 to 170,274
15169
mRNA_6802: 15170 - Hypothetical Protein, at 170,561 to 172,312
15170
mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172,404 to 173,557
15171
mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173,731 to 174,873
15172
mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183
15173
Group
Condition
mRNA
_6801
mRNA
_6802
mRNA
_6803
mRNA
_6804
mRNA
_6805
15169
15170
15171
15172
15173
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.7
+0.4
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
-0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.3
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
-0.5
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.3
-0.4
+0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.4
+0.3
-0.1
+0.0
growth on ypd
YPD
+0.2
+0.2
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.5
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.1
+0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.0
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
+0.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
+0.0
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.1
+0.2
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.3
+0.3
-0.0
+0.3
auxotrophy
YNB Glucose
+0.4
+0.3
-0.1
+0.4
+0.1
growth on oleic acid
YNB Glucose
+0.6
+0.2
+0.3
-0.1
+0.0
auxotrophy
Dropout Complete
+0.8
+0.2
+0.0
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+1.5
-0.0
+0.4
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+1.0
+0.3
+0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.6
+0.4
+1.0
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.3
+0.3
+0.8
-0.0
+0.1
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