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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15171 and 15172 are separated by 173 nucleotides
15172 and 15173 are separated by 118 nucleotides
15173 and 15174 are separated by 655 nucleotides
15174 and 15175 are separated by 423 nucleotides
mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172,404 to 173,557
15171
mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173,731 to 174,873
15172
mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183
15173
mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176,839 to 177,908
15174
mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178,332 to 182,273
15175
Group
Condition
mRNA
_6803
mRNA
_6804
mRNA
_6805
mRNA
_6806
mRNA
_6807
15171
15172
15173
15174
15175
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.1
-0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
-0.3
N.D.
+0.2
growth on ypd
YPD
-0.3
-0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.3
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
+0.4
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
+0.3
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
+0.0
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
+0.0
N.D.
+0.1
auxotrophy
Dropout Complete
+0.0
+0.2
+0.1
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
+0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.3
-0.1
+0.0
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.1
+0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
+0.0
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
+0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.0
+0.1
N.D.
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.1
+0.4
N.D.
+0.7
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