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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15172 and 15173 are separated by 118 nucleotides
15173 and 15174 are separated by 655 nucleotides
15174 and 15175 are separated by 423 nucleotides
15175 and 15176 are separated by 586 nucleotides
mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173,731 to 174,873
15172
mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183
15173
mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176,839 to 177,908
15174
mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178,332 to 182,273
15175
mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182,860 to 191,504
15176
Group
Condition
mRNA
_6804
mRNA
_6805
mRNA
_6806
mRNA
_6807
mRNA
_6808
15172
15173
15174
15175
15176
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
N.D.
-0.4
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
N.D.
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
N.D.
-0.0
+0.0
auxotrophy
YNB Glucose
+0.4
+0.1
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
N.D.
+0.0
-0.6
growth on ypd
YPD
-0.2
+0.1
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.3
N.D.
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.6
N.D.
-0.1
+1.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
N.D.
+0.2
-0.2
auxotrophy
Dropout Complete
+0.2
+0.1
N.D.
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
N.D.
-0.2
+0.8
growth on oleic acid
YNB Glucose
-0.1
+0.0
N.D.
+0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
N.D.
+0.0
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
N.D.
+0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
N.D.
+0.1
+0.8
growth on oleic acid
YNB Oleic Acid
+0.0
+0.0
N.D.
+0.4
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
N.D.
+0.7
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
N.D.
+0.4
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
N.D.
+0.7
+0.2
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