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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15173 and 15174 are separated by 655 nucleotides
15174 and 15175 are separated by 423 nucleotides
15175 and 15176 are separated by 586 nucleotides
15176 and 15177 are separated by 367 nucleotides
mRNA_6805: 15173 - Hypothetical Protein, at 174,992 to 176,183
15173
mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176,839 to 177,908
15174
mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178,332 to 182,273
15175
mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182,860 to 191,504
15176
mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191,872 to 193,044
15177
Group
Condition
mRNA
_6805
mRNA
_6806
mRNA
_6807
mRNA
_6808
mRNA
_6809
15173
15174
15175
15176
15177
auxotrophy
YNB Glucose
+0.1
N.D.
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
+0.0
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
-0.4
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.2
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
-0.1
+1.0
-0.6
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
+0.2
-0.2
-0.6
auxotrophy
Dropout Complete
+0.1
N.D.
+0.0
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.2
+0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
+0.1
-0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.0
-0.6
+0.5
growth on ypd
YPD
+0.1
N.D.
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.0
+0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
+0.8
-0.3
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.3
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.0
+0.6
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
+0.7
+0.2
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
+0.7
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.4
+0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.1
+0.8
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.7
+0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.4
+0.7
-0.0
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