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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15174 and 15175 are separated by 423 nucleotides
15175 and 15176 are separated by 586 nucleotides
15176 and 15177 are separated by 367 nucleotides
15177 and 15178 are separated by 352 nucleotides
mRNA_6806: 15174 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 176,839 to 177,908
15174
mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178,332 to 182,273
15175
mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182,860 to 191,504
15176
mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191,872 to 193,044
15177
mRNA_6810: 15178 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 193,397 to 194,230
15178
Group
Condition
mRNA
_6806
mRNA
_6807
mRNA
_6808
mRNA
_6809
mRNA
_6810
15174
15175
15176
15177
15178
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.6
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.1
-0.5
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.2
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.2
-0.5
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.5
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+1.0
-0.6
-0.5
auxotrophy
YNB Glucose
N.D.
-0.1
-0.3
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.6
+0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.8
-0.3
-0.4
growth on ypd
YPD
N.D.
+0.1
+0.2
-0.2
-0.0
auxotrophy
Dropout Complete
N.D.
+0.0
+0.0
-0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.7
-0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
+0.2
-0.6
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
+0.0
+0.3
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.4
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.8
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.6
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.6
-0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.7
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.7
+0.4
+0.1
+0.2
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