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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15176 and 15177 are separated by 367 nucleotides
15177 and 15178 are separated by 352 nucleotides
15178 and 15179 are separated by 241 nucleotides
15179 and 15180 are separated by 284 nucleotides
mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182,860 to 191,504
15176
mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191,872 to 193,044
15177
mRNA_6810: 15178 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 193,397 to 194,230
15178
mRNA_6811: 15179 - K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, at 194,472 to 196,083
15179
mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196,368 to 197,656
15180
Group
Condition
mRNA
_6808
mRNA
_6809
mRNA
_6810
mRNA
_6811
mRNA
_6812
15176
15177
15178
15179
15180
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.5
-0.4
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.5
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.6
+0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.4
-0.5
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.5
-0.1
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.2
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.3
-0.3
N.D.
+0.1
auxotrophy
YNB Glucose
-0.3
-0.2
+0.5
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
-0.6
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.6
+0.2
N.D.
+0.1
growth on ypd
YPD
+0.2
-0.2
-0.0
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.4
-0.3
+0.1
N.D.
-0.1
auxotrophy
Dropout Complete
+0.0
-0.3
+0.6
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.1
-0.4
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.6
-0.2
+0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.1
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.3
-0.4
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.8
+0.1
-0.4
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.0
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.1
+0.4
N.D.
+0.1
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