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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15177 and 15178 are separated by 352 nucleotides
15178 and 15179 are separated by 241 nucleotides
15179 and 15180 are separated by 284 nucleotides
15180 and 15181 are separated by 451 nucleotides
mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191,872 to 193,044
15177
mRNA_6810: 15178 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 193,397 to 194,230
15178
mRNA_6811: 15179 - K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, at 194,472 to 196,083
15179
mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196,368 to 197,656
15180
mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198,108 to 198,984
15181
Group
Condition
mRNA
_6809
mRNA
_6810
mRNA
_6811
mRNA
_6812
mRNA
_6813
15177
15178
15179
15180
15181
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.4
N.D.
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.5
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.5
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.6
+0.0
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.4
N.D.
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.1
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.2
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.4
N.D.
+0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.1
N.D.
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
-0.2
+0.5
N.D.
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
N.D.
-0.1
-0.4
auxotrophy
Dropout Complete
-0.3
+0.6
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
N.D.
-0.2
+0.2
growth on ypd
YPD
-0.2
-0.0
N.D.
-0.0
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
N.D.
+0.1
-0.2
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