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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15178 and 15179 are separated by 241 nucleotides
15179 and 15180 are separated by 284 nucleotides
15180 and 15181 are separated by 451 nucleotides
15181 and 15182 are separated by 940 nucleotides
mRNA_6810: 15178 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 193,397 to 194,230
15178
mRNA_6811: 15179 - K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, at 194,472 to 196,083
15179
mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196,368 to 197,656
15180
mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198,108 to 198,984
15181
mRNA_6814: 15182 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 199,925 to 200,316
15182
Group
Condition
mRNA
_6810
mRNA
_6811
mRNA
_6812
mRNA
_6813
mRNA
_6814
15178
15179
15180
15181
15182
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.1
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.6
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.1
-0.1
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.1
-0.4
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.4
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
+0.0
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
-0.1
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.1
-0.1
+0.1
auxotrophy
Dropout Complete
+0.6
N.D.
+0.1
-0.1
-0.7
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose
+0.5
N.D.
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.2
-0.2
-0.0
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.1
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.4
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.2
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
-0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.1
+0.2
-0.2
growth on ypd
YPD
-0.0
N.D.
-0.0
+0.6
-0.1
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