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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15181 and 15182 are separated by 940 nucleotides
15182 and 15183 are separated by 379 nucleotides
15183 and 15184 are separated by 171 nucleotides
15184 and 15185 are separated by 253 nucleotides
mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198,108 to 198,984
15181
mRNA_6814: 15182 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 199,925 to 200,316
15182
mRNA_6815: 15183 - HMMPfam-PUB domain-PF09409,SUPERFAMILY--SSF143503, at 200,696 to 201,916
15183
mRNA_6816: 15184 - K02437 gcvH, GCSH glycine cleavage system H protein, at 202,088 to 202,810
15184
mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203,064 to 206,112
15185
Group
Condition
mRNA
_6813
mRNA
_6814
mRNA
_6815
mRNA
_6816
mRNA
_6817
15181
15182
15183
15184
15185
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.8
-0.2
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.9
-0.2
N.D.
-0.2
auxotrophy
Dropout Complete
-0.1
-0.7
-0.3
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.7
-0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.3
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
-0.3
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.0
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.0
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-0.2
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.2
+0.5
N.D.
+0.1
growth on ypd
YPD
+0.6
-0.1
+0.1
N.D.
+0.1
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