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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15182 and 15183 are separated by 379 nucleotides
15183 and 15184 are separated by 171 nucleotides
15184 and 15185 are separated by 253 nucleotides
15185 and 15186 are separated by 451 nucleotides
mRNA_6814: 15182 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 199,925 to 200,316
15182
mRNA_6815: 15183 - HMMPfam-PUB domain-PF09409,SUPERFAMILY--SSF143503, at 200,696 to 201,916
15183
mRNA_6816: 15184 - K02437 gcvH, GCSH glycine cleavage system H protein, at 202,088 to 202,810
15184
mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203,064 to 206,112
15185
mRNA_6818: 15186 - KOG0729 26S proteasome regulatory complex, ATPase RPT1, at 206,564 to 206,841
15186
Group
Condition
mRNA
_6814
mRNA
_6815
mRNA
_6816
mRNA
_6817
mRNA
_6818
15182
15183
15184
15185
15186
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.1
N.D.
-0.1
-2.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.2
N.D.
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.8
-0.2
N.D.
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
N.D.
-0.3
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
N.D.
+0.1
-1.9
auxotrophy
Dropout Complete
-0.7
-0.3
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.3
N.D.
-0.4
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.2
N.D.
-0.1
-0.7
auxotrophy
YNB Glucose
-0.3
-0.2
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
-0.4
-0.7
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
+0.0
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
N.D.
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
-0.2
-0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
N.D.
-0.2
-0.1
growth on ypd
YPD
-0.1
+0.1
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
-0.1
+0.2
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