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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15183 and 15184 are separated by 171 nucleotides
15184 and 15185 are separated by 253 nucleotides
15185 and 15186 are separated by 451 nucleotides
15186 and 15187 are separated by 171 nucleotides
mRNA_6815: 15183 - HMMPfam-PUB domain-PF09409,SUPERFAMILY--SSF143503, at 200,696 to 201,916
15183
mRNA_6816: 15184 - K02437 gcvH, GCSH glycine cleavage system H protein, at 202,088 to 202,810
15184
mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203,064 to 206,112
15185
mRNA_6818: 15186 - KOG0729 26S proteasome regulatory complex, ATPase RPT1, at 206,564 to 206,841
15186
mRNA_6819: 15187 - SUPERFAMILY--SSF103107, at 207,013 to 207,504
15187
Group
Condition
mRNA
_6815
mRNA
_6816
mRNA
_6817
mRNA
_6818
mRNA
_6819
15183
15184
15185
15186
15187
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.1
-2.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.1
-1.9
-1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.2
-0.6
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.4
-0.7
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.2
-0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.2
-0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.2
-0.2
-0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.1
-0.7
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
+0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
-0.1
-0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.2
-0.5
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.4
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.4
-0.3
+1.0
auxotrophy
YNB Glucose
-0.2
N.D.
-0.2
-0.3
+0.9
growth on ypd
YPD
+0.1
N.D.
+0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
-0.1
-0.5
+1.3
auxotrophy
Dropout Complete
-0.3
N.D.
-0.4
-0.1
+1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
+0.2
+0.8
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.0
-0.8
+1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
-0.2
+0.0
+1.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.3
-1.2
+2.9
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