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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15190 and 15191 are separated by 40 nucleotides
15191 and 15192 are separated by 302 nucleotides
15192 and 15193 are separated by 212 nucleotides
15193 and 15194 are separated by 111 nucleotides
mRNA_6822: 15190 - K20303 TRAPPC4, TRS23 trafficking protein particle complex subunit 4, at 212,371 to 212,952
15190
mRNA_6823: 15191 - BLAST TNFR/NGFR cysteine-rich region family protein [Rh..., at 212,993 to 213,573
15191
mRNA_6824: 15192 - K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1, at 213,876 to 215,865
15192
mRNA_6825: 15193 - K08876 SCYL1 SCY1-like protein 1, at 216,078 to 219,615
15193
mRNA_6826: 15194 - KOG2061 Uncharacterized MYND Zn-finger protein, at 219,727 to 220,528
15194
Group
Condition
mRNA
_6822
mRNA
_6823
mRNA
_6824
mRNA
_6825
mRNA
_6826
15190
15191
15192
15193
15194
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.3
N.D.
-0.6
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-2.2
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-2.2
N.D.
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
N.D.
+0.5
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
N.D.
+0.2
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.2
-0.3
growth on ypd
YPD
N.D.
-0.5
N.D.
+0.3
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.8
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
N.D.
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.8
N.D.
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.9
N.D.
+0.2
+0.1
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
+0.6
+0.4
auxotrophy
Dropout Complete
N.D.
+0.8
N.D.
+0.8
+0.1
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