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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15192 and 15193 are separated by 212 nucleotides
15193 and 15194 are separated by 111 nucleotides
15194 and 15195 are separated by 266 nucleotides
15195 and 15196 are separated by 265 nucleotides
mRNA_6824: 15192 - K03061 PSMC2, RPT1 26S proteasome regulatory subunit T1, at 213,876 to 215,865
15192
mRNA_6825: 15193 - K08876 SCYL1 SCY1-like protein 1, at 216,078 to 219,615
15193
mRNA_6826: 15194 - KOG2061 Uncharacterized MYND Zn-finger protein, at 219,727 to 220,528
15194
mRNA_6827: 15195 - K19029 PFKFB2 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 2, at 220,795 to 223,587
15195
mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223,853 to 225,358
15196
Group
Condition
mRNA
_6824
mRNA
_6825
mRNA
_6826
mRNA
_6827
mRNA
_6828
15192
15193
15194
15195
15196
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.6
-0.4
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.3
-0.3
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
+0.1
-0.9
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.1
-1.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
+0.2
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
+0.2
-0.3
-0.3
growth on ypd
YPD
N.D.
+0.3
+0.4
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.1
-0.3
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.3
-0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
+0.1
-0.6
+0.3
auxotrophy
Dropout Complete
N.D.
+0.8
+0.1
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.0
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.1
+0.7
-0.1
auxotrophy
YNB Glucose
N.D.
+0.6
+0.4
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.3
+0.5
+0.6
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