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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15194 and 15195 are separated by 266 nucleotides
15195 and 15196 are separated by 265 nucleotides
15196 and 15197 are separated by 516 nucleotides
15197 and 15198 are separated by 149 nucleotides
mRNA_6826: 15194 - KOG2061 Uncharacterized MYND Zn-finger protein, at 219,727 to 220,528
15194
mRNA_6827: 15195 - K19029 PFKFB2 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 2, at 220,795 to 223,587
15195
mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223,853 to 225,358
15196
mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225,875 to 227,277
15197
mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227,427 to 228,724
15198
Group
Condition
mRNA
_6826
mRNA
_6827
mRNA
_6828
mRNA
_6829
mRNA
_6830
15194
15195
15196
15197
15198
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.0
+0.0
N.D.
-2.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.4
-1.2
N.D.
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.9
-0.2
N.D.
-1.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
-1.1
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.1
N.D.
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.6
+0.3
N.D.
-1.5
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.2
N.D.
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
+0.3
N.D.
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
N.D.
-0.3
growth on ypd
YPD
+0.4
-0.2
-0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.5
N.D.
-0.7
auxotrophy
Dropout Complete
+0.1
+0.0
-0.5
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.5
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
-0.3
N.D.
+0.5
auxotrophy
YNB Glucose
+0.4
+0.0
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
+0.4
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.7
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.5
+0.6
N.D.
-0.8
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