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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15196 and 15197 are separated by 516 nucleotides
15197 and 15198 are separated by 149 nucleotides
15198 and 15199 are separated by 308 nucleotides
15199 and 15200 are separated by 178 nucleotides
mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223,853 to 225,358
15196
mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225,875 to 227,277
15197
mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227,427 to 228,724
15198
mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229,033 to 229,533
15199
mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229,712 to 231,545
15200
Group
Condition
mRNA
_6828
mRNA
_6829
mRNA
_6830
mRNA
_6831
mRNA
_6832
15196
15197
15198
15199
15200
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-2.8
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
N.D.
-1.1
-0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-1.9
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
-1.5
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
N.D.
-1.1
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-1.8
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
-0.8
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-1.1
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.7
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.3
+0.6
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.5
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
-0.7
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
-0.4
+0.6
+0.1
auxotrophy
Dropout Complete
-0.5
N.D.
+0.2
+0.3
+0.1
growth on ypd
YPD
-0.4
N.D.
-0.2
+0.6
+0.3
auxotrophy
YNB Glucose
+0.1
N.D.
-0.4
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.2
+0.5
+0.7
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