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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15197 and 15198 are separated by 149 nucleotides
15198 and 15199 are separated by 308 nucleotides
15199 and 15200 are separated by 178 nucleotides
15200 and 15201 are separated by 146 nucleotides
mRNA_6829: 15197 - HMMPfam-TAP42-like family-PF04177, at 225,875 to 227,277
15197
mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227,427 to 228,724
15198
mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229,033 to 229,533
15199
mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229,712 to 231,545
15200
mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231,692 to 232,700
15201
Group
Condition
mRNA
_6829
mRNA
_6830
mRNA
_6831
mRNA
_6832
mRNA
_6833
15197
15198
15199
15200
15201
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.5
-0.1
-0.3
-1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
-0.5
-0.5
-1.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-2.8
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.9
+0.4
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.8
+0.3
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
-0.3
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-1.1
-0.0
+0.1
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.7
+0.1
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.1
-0.1
-0.9
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.0
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.1
+0.3
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.0
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
+0.6
+0.1
-0.6
auxotrophy
YNB Glucose
N.D.
-0.4
+0.8
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.6
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.3
+0.4
+0.1
auxotrophy
Dropout Complete
N.D.
+0.2
+0.3
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.5
+0.7
-0.7
growth on ypd
YPD
N.D.
-0.2
+0.6
+0.3
+0.6
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