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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15200 and 15201 are separated by 146 nucleotides
15201 and 15202 are separated by 964 nucleotides
15202 and 15203 are separated by 468 nucleotides
15203 and 15204 are separated by 1029 nucleotides
mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229,712 to 231,545
15200
mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231,692 to 232,700
15201
mRNA_6834: 15202 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 233,665 to 235,762
15202
mRNA_6835: 15203 - Hypothetical Protein, at 236,231 to 236,767
15203
mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899
15204
Group
Condition
mRNA
_6832
mRNA
_6833
mRNA
_6834
mRNA
_6835
mRNA
_6836
15200
15201
15202
15203
15204
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.2
-0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-1.6
-0.0
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.9
-0.2
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.0
-0.4
-0.4
growth on oleic acid
YNB Glucose
-0.0
-0.4
-0.0
-0.0
-0.3
auxotrophy
YNB Glucose
-0.1
-0.6
-0.2
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.0
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
+0.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.6
+0.1
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
-0.2
+0.3
-0.1
auxotrophy
Dropout Complete
+0.1
-0.2
+0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.1
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
-0.1
-0.4
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.1
+0.9
-0.8
growth on ypd
YPD
+0.3
+0.6
-0.3
+0.6
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.7
+0.1
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.1
+0.5
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.2
+0.0
-0.2
+1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
+0.4
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.1
+0.1
+0.7
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.0
+0.6
+0.6
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