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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15204 and 15205 are separated by 496 nucleotides
15205 and 15206 are separated by 155 nucleotides
15206 and 15207 are separated by 207 nucleotides
15207 and 15208 are separated by 108 nucleotides
mRNA_6836: 15204 - Interpro Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family, at 237,797 to 238,899
15204
mRNA_6837: 15205 - HMMPfam-DUF2407 ubiquitin-like domain-PF10302,HMMPfam-DUF2407 C-terminal domain-PF13373, at 239,396 to 240,785
15205
mRNA_6838: 15206 - K17656 MSS51 mitochondrial splicing suppressor protein 51, at 240,941 to 242,492
15206
mRNA_6839: 15207 - K17257 ITFG1 integrin alpha FG-GAP repeat containing protein 1, at 242,700 to 245,129
15207
mRNA_6840: 15208 - SUPERFAMILY--SSF81383, at 245,238 to 247,225
15208
Group
Condition
mRNA
_6836
mRNA
_6837
mRNA
_6838
mRNA
_6839
mRNA
_6840
15204
15205
15206
15207
15208
growth on ypd
YPD
-0.8
-0.2
N.D.
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.3
N.D.
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.8
N.D.
-0.6
+0.2
growth on oleic acid
YNB Glucose
-0.3
-0.3
N.D.
+0.7
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
N.D.
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
N.D.
+0.9
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.1
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
N.D.
+0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
N.D.
+1.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
N.D.
+0.7
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
N.D.
+1.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.4
N.D.
+1.5
-0.2
auxotrophy
YNB Glucose
+0.0
-0.1
N.D.
+1.3
-0.2
auxotrophy
Dropout Complete
+0.3
-0.3
N.D.
+1.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
N.D.
+1.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.0
N.D.
+0.5
+0.2
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