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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15209 and 15210 are separated by 45 nucleotides
15210 and 15211 are separated by 122 nucleotides
15211 and 15212 are separated by 282 nucleotides
15212 and 15213 are separated by 103 nucleotides
mRNA_6841: 15209 - K14328 UPF3, RENT3 regulator of nonsense transcripts 3, at 247,342 to 248,930
15209
mRNA_6842: 15210 - K02605 ORC3 origin recognition complex subunit 3, at 248,976 to 251,916
15210
mRNA_6843: 15211 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 252,039 to 252,813
15211
mRNA_6844: 15212 - K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101, at 253,096 to 258,115
15212
mRNA_6845: 15213 - Hypothetical Protein, at 258,219 to 259,363
15213
Group
Condition
mRNA
_6841
mRNA
_6842
mRNA
_6843
mRNA
_6844
mRNA
_6845
15209
15210
15211
15212
15213
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-2.9
-0.6
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-1.7
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-1.2
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.6
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.6
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.7
-0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.6
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
-0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
+0.4
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.1
+0.2
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
+0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
+0.3
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.9
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.5
+0.2
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