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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15212 and 15213 are separated by 103 nucleotides
15213 and 15214 are separated by 1465 nucleotides
15214 and 15215 are separated by 1310 nucleotides
15215 and 15216 are separated by 807 nucleotides
mRNA_6844: 15212 - K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101, at 253,096 to 258,115
15212
mRNA_6845: 15213 - Hypothetical Protein, at 258,219 to 259,363
15213
mRNA_6846: 15214 - K02603 ORC1 origin recognition complex subunit 1, at 260,829 to 263,990
15214
mRNA_6847: 15215 - Hypothetical Protein, at 265,301 to 266,497
15215
mRNA_6848: 15216 - KOG1514 Origin recognition complex, subunit 1, and related proteins, at 267,305 to 268,256
15216
Group
Condition
mRNA
_6844
mRNA
_6845
mRNA
_6846
mRNA
_6847
mRNA
_6848
15212
15213
15214
15215
15216
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
-2.8
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-1.2
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.1
-0.6
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
+0.0
-0.7
-0.0
auxotrophy
YNB Glucose
+0.5
+0.1
-0.7
-1.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.1
-0.7
-0.8
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.7
-0.2
-0.1
auxotrophy
Dropout Complete
+0.4
-0.2
-0.1
-0.9
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
-0.7
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.1
-0.6
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
-1.7
+0.8
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.1
-0.0
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+1.0
-0.9
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.3
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
+2.7
-0.7
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
+2.1
-0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.5
+0.5
+0.5
growth on ypd
YPD
-0.4
-0.1
+1.1
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
+1.9
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+3.2
-0.3
-0.3
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