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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15213 and 15214 are separated by 1465 nucleotides
15214 and 15215 are separated by 1310 nucleotides
15215 and 15216 are separated by 807 nucleotides
15216 and 15217 are separated by 1712 nucleotides
mRNA_6845: 15213 - Hypothetical Protein, at 258,219 to 259,363
15213
mRNA_6846: 15214 - K02603 ORC1 origin recognition complex subunit 1, at 260,829 to 263,990
15214
mRNA_6847: 15215 - Hypothetical Protein, at 265,301 to 266,497
15215
mRNA_6848: 15216 - KOG1514 Origin recognition complex, subunit 1, and related proteins, at 267,305 to 268,256
15216
mRNA_6849: 15217 - K14686 SLC31A1, CTR1 solute carrier family 31 (copper transporter), member 1, at 269,969 to 271,865
15217
Group
Condition
mRNA
_6845
mRNA
_6846
mRNA
_6847
mRNA
_6848
mRNA
_6849
15213
15214
15215
15216
15217
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-2.8
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.7
-0.8
-0.0
+0.0
auxotrophy
YNB Glucose
+0.1
-0.7
-1.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-1.2
-0.2
+0.1
-0.0
auxotrophy
Dropout Complete
-0.2
-0.1
-0.9
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.7
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.7
-0.2
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-1.7
+0.8
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.6
-0.3
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.6
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.7
-0.0
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+1.0
-0.9
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.2
+0.2
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+2.7
-0.7
-0.9
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+2.1
-0.2
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+1.9
+0.1
-0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.5
+0.5
+0.5
-0.0
growth on ypd
YPD
-0.1
+1.1
+0.2
+0.7
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+3.2
-0.3
-0.3
+0.0
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