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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15216 and 15217 are separated by 1712 nucleotides
15217 and 15218 are separated by 138 nucleotides
15218 and 15219 are separated by 209 nucleotides
15219 and 15220 are separated by 2484 nucleotides
mRNA_6848: 15216 - KOG1514 Origin recognition complex, subunit 1, and related proteins, at 267,305 to 268,256
15216
mRNA_6849: 15217 - K14686 SLC31A1, CTR1 solute carrier family 31 (copper transporter), member 1, at 269,969 to 271,865
15217
mRNA_6850: 15218 - K05605 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, at 272,004 to 274,065
15218
mRNA_6851: 15219 - Hypothetical Protein, at 274,275 to 275,000
15219
mRNA_6852: 15220 - KOG1337 N-methyltransferase, at 277,485 to 279,463
15220
Group
Condition
mRNA
_6848
mRNA
_6849
mRNA
_6850
mRNA
_6851
mRNA
_6852
15216
15217
15218
15219
15220
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.1
-0.4
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
-0.5
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.3
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.0
+0.7
-1.3
-0.1
auxotrophy
Dropout Complete
-0.1
+0.1
-0.3
-0.7
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.0
-0.2
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.0
-0.4
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.0
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
-0.0
-0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.3
-0.4
-0.2
auxotrophy
YNB Glucose
+0.1
+0.2
-0.2
-0.6
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.0
-0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.0
-0.6
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.0
-0.1
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.3
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
+0.0
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.0
-0.3
+0.2
+0.4
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
+0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.0
-0.2
+0.1
-0.1
growth on ypd
YPD
+0.7
+0.0
+0.2
+0.3
+0.4
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