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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15218 and 15219 are separated by 209 nucleotides
15219 and 15220 are separated by 2484 nucleotides
15220 and 15221 are separated by 430 nucleotides
15221 and 15222 are separated by 305 nucleotides
mRNA_6850: 15218 - K05605 HIBCH 3-hydroxyisobutyryl-CoA hydrolase, at 272,004 to 274,065
15218
mRNA_6851: 15219 - Hypothetical Protein, at 274,275 to 275,000
15219
mRNA_6852: 15220 - KOG1337 N-methyltransferase, at 277,485 to 279,463
15220
mRNA_6853: 15221 - Interpro Altered inheritance of mitochondria 5, at 279,894 to 280,567
15221
mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280,873 to 281,900
15222
Group
Condition
mRNA
_6850
mRNA
_6851
mRNA
_6852
mRNA
_6853
mRNA
_6854
15218
15219
15220
15221
15222
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-1.3
-0.1
-0.7
+0.2
auxotrophy
Dropout Complete
-0.3
-0.7
+0.1
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.5
-0.4
-0.2
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.3
-0.0
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.5
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
-0.2
-0.0
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
+0.1
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.4
-0.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose
-0.2
-0.6
+0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.0
-0.6
+0.4
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.4
-0.0
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.2
-0.3
+0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-0.1
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.0
-0.1
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
+0.2
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
-0.0
+0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.0
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
+0.4
-0.2
+0.3
growth on ypd
YPD
+0.2
+0.3
+0.4
+0.2
-0.0
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