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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15219 and 15220 are separated by 2484 nucleotides
15220 and 15221 are separated by 430 nucleotides
15221 and 15222 are separated by 305 nucleotides
15222 and 15223 are separated by 332 nucleotides
mRNA_6851: 15219 - Hypothetical Protein, at 274,275 to 275,000
15219
mRNA_6852: 15220 - KOG1337 N-methyltransferase, at 277,485 to 279,463
15220
mRNA_6853: 15221 - Interpro Altered inheritance of mitochondria 5, at 279,894 to 280,567
15221
mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280,873 to 281,900
15222
mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773
15223
Group
Condition
mRNA
_6851
mRNA
_6852
mRNA
_6853
mRNA
_6854
mRNA
_6855
15219
15220
15221
15222
15223
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
-0.1
-0.7
+0.2
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
-0.6
+0.1
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
-0.2
-0.1
-0.7
auxotrophy
Dropout Complete
-0.7
+0.1
-0.1
-0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
-0.0
-0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
-0.3
+0.3
-1.3
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
-0.2
+0.3
-0.7
auxotrophy
YNB Glucose
-0.6
+0.2
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.0
-0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
-0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.6
+0.4
-0.3
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.0
+0.1
-0.0
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.2
-0.1
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.2
+0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
+0.2
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.2
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
-0.2
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
+0.3
+0.4
+0.5
growth on ypd
YPD
+0.3
+0.4
+0.2
-0.0
+0.3
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