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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15222 and 15223 are separated by 332 nucleotides
15223 and 15224 are separated by 288 nucleotides
15224 and 15225 are separated by 1266 nucleotides
15225 and 15226 are separated by 934 nucleotides
mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280,873 to 281,900
15222
mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773
15223
mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284,062 to 291,229
15224
mRNA_6857: 15225 - Hypothetical Protein, at 292,496 to 294,098
15225
mRNA_6858: 15226 - SUPERFAMILY--SSF103473, at 295,033 to 296,248
15226
Group
Condition
mRNA
_6854
mRNA
_6855
mRNA
_6856
mRNA
_6857
mRNA
_6858
15222
15223
15224
15225
15226
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.7
-0.1
-0.1
-0.4
auxotrophy
Dropout Complete
-0.2
-0.5
+0.2
-0.3
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.3
-0.2
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.7
-0.0
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.8
+0.1
-0.1
-0.4
growth on oleic acid
YNB Glucose
-0.1
-0.5
+0.1
-0.3
-0.2
auxotrophy
YNB Glucose
-0.2
-0.3
+0.2
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.9
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.0
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.3
-0.0
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.1
+0.1
+0.0
growth on ypd
YPD
-0.0
+0.3
+0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.0
+0.1
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.5
-0.3
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.0
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
+0.1
+0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.0
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.0
+0.1
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
+0.1
+0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.5
-0.0
+0.1
+0.1
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