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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15225 and 15226 are separated by 934 nucleotides
15226 and 15227 are separated by 953 nucleotides
15227 and 15228 are separated by 594 nucleotides
15228 and 15229 are separated by 283 nucleotides
mRNA_6857: 15225 - Hypothetical Protein, at 292,496 to 294,098
15225
mRNA_6858: 15226 - SUPERFAMILY--SSF103473, at 295,033 to 296,248
15226
mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297,202 to 298,993
15227
mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299,588 to 301,362
15228
mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301,646 to 303,773
15229
Group
Condition
mRNA
_6857
mRNA
_6858
mRNA
_6859
mRNA
_6860
mRNA
_6861
15225
15226
15227
15228
15229
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
N.D.
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
N.D.
-0.5
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
N.D.
-0.4
-0.1
growth on ypd
YPD
-0.3
-0.1
N.D.
+0.4
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
N.D.
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
N.D.
+0.2
-0.0
auxotrophy
Dropout Complete
-0.3
-0.5
N.D.
+0.5
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
N.D.
-0.1
+0.0
growth on oleic acid
YNB Glucose
-0.3
-0.2
N.D.
+0.6
-0.1
auxotrophy
YNB Glucose
+0.1
-0.5
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.4
N.D.
-0.6
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.3
N.D.
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
N.D.
-0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.2
N.D.
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
N.D.
+0.5
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.0
N.D.
+0.8
+0.2
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