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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15227 and 15228 are separated by 594 nucleotides
15228 and 15229 are separated by 283 nucleotides
15229 and 15230 are separated by 59 nucleotides
15230 and 15231 are separated by 413 nucleotides
mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297,202 to 298,993
15227
mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299,588 to 301,362
15228
mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301,646 to 303,773
15229
mRNA_6862: 15230 - KOG0754 Mitochondrial oxodicarboxylate carrier protein, at 303,833 to 305,130
15230
mRNA_6863: 15231 - HMMPfam-Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like-PF05365,SUPERFAMILY--SSF81514, at 305,544 to 305,791
15231
Group
Condition
mRNA
_6859
mRNA
_6860
mRNA
_6861
mRNA
_6862
mRNA
_6863
15227
15228
15229
15230
15231
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
+0.3
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.3
-0.6
N.D.
growth on ypd
YPD
N.D.
+0.4
-0.8
-0.7
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.6
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.1
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
+0.2
-1.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
+0.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.1
-0.5
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.0
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.0
-0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.3
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.2
-0.3
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.6
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.5
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
+0.5
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.8
+0.2
-0.4
N.D.
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