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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15228 and 15229 are separated by 283 nucleotides
15229 and 15230 are separated by 59 nucleotides
15230 and 15231 are separated by 413 nucleotides
15231 and 15232 are separated by 162 nucleotides
mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299,588 to 301,362
15228
mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301,646 to 303,773
15229
mRNA_6862: 15230 - KOG0754 Mitochondrial oxodicarboxylate carrier protein, at 303,833 to 305,130
15230
mRNA_6863: 15231 - HMMPfam-Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like-PF05365,SUPERFAMILY--SSF81514, at 305,544 to 305,791
15231
mRNA_6864: 15232 - K18416 THEX1, ERI1 3'-5' exoribonuclease 1, at 305,954 to 308,144
15232
Group
Condition
mRNA
_6860
mRNA
_6861
mRNA
_6862
mRNA
_6863
mRNA
_6864
15228
15229
15230
15231
15232
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.3
-1.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
-0.6
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.6
-0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.5
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.0
-0.0
N.D.
-0.4
growth on ypd
YPD
+0.4
-0.8
-0.7
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-0.5
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.2
-1.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
-0.3
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.5
+0.0
N.D.
-0.4
auxotrophy
YNB Glucose
+0.3
+0.1
-0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.6
-0.1
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.2
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.3
N.D.
+0.4
auxotrophy
Dropout Complete
+0.5
+0.1
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
+0.2
-0.4
N.D.
-0.1
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