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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15234 and 15235 are separated by 130 nucleotides
15235 and 15236 are separated by 44 nucleotides
15236 and 15237 are separated by 682 nucleotides
15237 and 15238 are separated by 47 nucleotides
mRNA_6866: 15234 - Hypothetical Protein, at 309,366 to 310,327
15234
mRNA_6867: 15235 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 310,458 to 312,954
15235
mRNA_6868: 15236 - Hypothetical Protein, at 312,999 to 313,640
15236
mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314,323 to 315,416
15237
mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315,464 to 319,765
15238
Group
Condition
mRNA
_6866
mRNA
_6867
mRNA
_6868
mRNA
_6869
mRNA
_6870
15234
15235
15236
15237
15238
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.8
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.5
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
-0.6
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.2
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.0
+0.2
-0.2
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
-0.2
N.D.
+0.1
growth on ypd
YPD
+0.1
+0.2
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
+0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
-0.6
N.D.
+0.2
auxotrophy
YNB Glucose
+0.7
-0.2
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.3
N.D.
+0.1
auxotrophy
Dropout Complete
+0.4
+0.1
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.5
+0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.9
+0.4
N.D.
+0.3
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