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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15236 and 15237 are separated by 682 nucleotides
15237 and 15238 are separated by 47 nucleotides
15238 and 15239 are separated by 179 nucleotides
15239 and 15240 are separated by 175 nucleotides
mRNA_6868: 15236 - Hypothetical Protein, at 312,999 to 313,640
15236
mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314,323 to 315,416
15237
mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315,464 to 319,765
15238
mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501
15239
mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325,677 to 326,693
15240
Group
Condition
mRNA
_6868
mRNA
_6869
mRNA
_6870
mRNA
_6871
mRNA
_6872
15236
15237
15238
15239
15240
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.1
-0.5
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
N.D.
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.0
-0.4
-0.5
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.0
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
-0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
-0.2
-1.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.6
N.D.
+0.2
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.0
-0.3
growth on ypd
YPD
-0.2
N.D.
+0.1
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.2
+0.6
-0.2
auxotrophy
Dropout Complete
-0.1
N.D.
+0.2
+0.5
-0.2
auxotrophy
YNB Glucose
-0.2
N.D.
+0.3
+0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
N.D.
-0.0
+0.5
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.0
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.1
+0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.3
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.0
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.3
+0.4
+1.4
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