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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15238 and 15239 are separated by 179 nucleotides
15239 and 15240 are separated by 175 nucleotides
15240 and 15241 are separated by 230 nucleotides
15241 and 15242 are separated by 80 nucleotides
mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315,464 to 319,765
15238
mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501
15239
mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325,677 to 326,693
15240
mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326,924 to 328,423
15241
mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328,504 to 329,604
15242
Group
Condition
mRNA
_6870
mRNA
_6871
mRNA
_6872
mRNA
_6873
mRNA
_6874
15238
15239
15240
15241
15242
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
-1.7
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-1.0
+0.4
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.4
-0.5
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
-0.7
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.0
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
+0.3
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.3
+0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
-0.3
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.5
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.1
+0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
+0.2
+0.3
growth on ypd
YPD
+0.1
+0.2
+0.1
+1.0
-0.3
auxotrophy
Dropout Complete
+0.2
+0.5
-0.2
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.6
-0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+1.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
-0.2
+0.5
+0.4
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.7
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.5
+0.8
+0.2
+0.1
auxotrophy
YNB Glucose
+0.3
+0.3
+0.2
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
+1.4
+0.4
-0.7
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