Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15239 and 15240 are separated by 175 nucleotides15240 and 15241 are separated by 230 nucleotides15241 and 15242 are separated by 80 nucleotides15242 and 15243 are separated by 271 nucleotides mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325,677 to 326,693 15240 mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326,924 to 328,423 15241 mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328,504 to 329,604 15242 mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329,876 to 331,485 15243
Group Condition mRNA_6871 mRNA_6872 mRNA_6873 mRNA_6874 mRNA_6875
15239 15240 15241 15242 15243
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 -1.7 -0.2 -0.2 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.4 -0.5 +0.2 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.7 -0.1 +0.4 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.3 +0.0 +0.2 -0.5
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.3 -0.3 -0.2 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -1.0 +0.4 +0.0 +0.0 +0.3
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.0 +0.1 +0.1 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 +0.0 +0.1 +0.1 +0.1
growth on ypd YPD +0.2 +0.1 +1.0 -0.3 -0.6
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.2 +0.2 +0.3 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 +0.5 +0.1 -0.2 +0.0
growth on ricinoleic acid YNB Glucose +0.2 -0.3 +0.0 +0.3 +0.4
auxotrophy Dropout Complete +0.5 -0.2 +0.4 +0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.1 +0.4 +0.4 +0.0
growth on oleic acid YNB Oleic Acid +0.6 -0.2 +0.3 +0.2 +0.2
auxotrophy YNB Glucose 75mM Arginine +0.4 -0.2 +0.5 +0.4 -0.0
auxotrophy YNB Glucose +0.3 +0.2 +0.4 +0.4 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 +1.0 -0.0 +0.1 +0.3
growth on oleic acid YNB Glucose +0.2 +0.7 +0.1 +0.4 +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.5 +0.8 +0.2 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 +1.4 +0.4 -0.7 +0.5
remove
mRNA_6871
plot
remove
mRNA_6872
plot
remove
mRNA_6873
remove
mRNA_6874
plot
remove
mRNA_6875
plot