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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15239 and 15240 are separated by 175 nucleotides
15240 and 15241 are separated by 230 nucleotides
15241 and 15242 are separated by 80 nucleotides
15242 and 15243 are separated by 271 nucleotides
mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501
15239
mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325,677 to 326,693
15240
mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326,924 to 328,423
15241
mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328,504 to 329,604
15242
mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329,876 to 331,485
15243
Group
Condition
mRNA
_6871
mRNA
_6872
mRNA
_6873
mRNA
_6874
mRNA
_6875
15239
15240
15241
15242
15243
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-1.7
-0.2
-0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.5
+0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.7
-0.1
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.3
+0.0
+0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.3
-0.3
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
+0.4
+0.0
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
+0.1
+0.1
+0.1
growth on ypd
YPD
+0.2
+0.1
+1.0
-0.3
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.2
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.5
+0.1
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
-0.3
+0.0
+0.3
+0.4
auxotrophy
Dropout Complete
+0.5
-0.2
+0.4
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
+0.4
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
+0.6
-0.2
+0.3
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
+0.5
+0.4
-0.0
auxotrophy
YNB Glucose
+0.3
+0.2
+0.4
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+1.0
-0.0
+0.1
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.7
+0.1
+0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.8
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+1.4
+0.4
-0.7
+0.5
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