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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15242 and 15243 are separated by 271 nucleotides
15243 and 15244 are separated by 478 nucleotides
15244 and 15245 are separated by 570 nucleotides
15245 and 15246 are separated by 378 nucleotides
mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328,504 to 329,604
15242
mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329,876 to 331,485
15243
mRNA_6876: 15244 - Hypothetical Protein, at 331,964 to 333,369
15244
mRNA_6877: 15245 - KOG3912 Predicted integral membrane protein, at 333,940 to 335,664
15245
mRNA_6878: 15246 - Hypothetical Protein, at 336,043 to 337,941
15246
Group
Condition
mRNA
_6874
mRNA
_6875
mRNA
_6876
mRNA
_6877
mRNA
_6878
15242
15243
15244
15245
15246
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-1.8
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-1.1
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.0
-0.6
+0.3
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
-1.6
-0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
-0.5
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.5
-0.9
+0.1
+0.2
growth on ypd
YPD
-0.3
-0.6
+0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
-0.3
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.5
+0.0
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.5
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
-0.2
+0.7
-0.5
growth on oleic acid
YNB Glucose
+0.4
+0.1
+0.2
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.0
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.5
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
+0.5
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.4
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
+0.8
+0.2
-0.0
auxotrophy
Dropout Complete
+0.1
-0.1
+1.0
+0.0
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.4
+0.6
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
+1.0
+0.1
+0.2
auxotrophy
YNB Glucose
+0.4
+0.1
+1.1
+0.2
+0.4
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