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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15244 and 15245 are separated by 570 nucleotides
15245 and 15246 are separated by 378 nucleotides
15246 and 15247 are separated by 1384 nucleotides
15247 and 15248 are separated by 918 nucleotides
mRNA_6876: 15244 - Hypothetical Protein, at 331,964 to 333,369
15244
mRNA_6877: 15245 - KOG3912 Predicted integral membrane protein, at 333,940 to 335,664
15245
mRNA_6878: 15246 - Hypothetical Protein, at 336,043 to 337,941
15246
mRNA_6879: 15247 - KOG0293 WD40 repeat-containing protein, at 339,326 to 341,674
15247
mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342,593 to 344,205
15248
Group
Condition
mRNA
_6876
mRNA
_6877
mRNA
_6878
mRNA
_6879
mRNA
_6880
15244
15245
15246
15247
15248
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.3
-0.6
-0.9
-1.9
facs on lipid accumulation
Sorted High BODIPY Gate
-1.8
+0.2
-0.7
-1.4
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
+0.1
+0.2
+0.2
-2.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.3
-0.1
+0.4
-1.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
+0.1
-0.2
+0.0
-2.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.1
+0.1
-0.3
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.3
-0.8
-0.7
+0.1
growth on oleic acid
YNB Glucose
+0.2
-0.3
-0.0
-0.1
-1.5
growth on ricinoleic acid
YNB Glucose
+0.6
+0.1
+0.0
-0.1
-2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
-0.1
+0.1
+0.0
-0.2
auxotrophy
YNB Glucose
+1.1
+0.2
+0.4
-0.3
-2.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.6
-0.0
+0.3
-0.7
+1.2
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.1
+0.2
+0.2
-2.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
+0.2
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.7
-0.5
-0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.4
-0.0
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.1
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.8
+0.2
-0.0
-0.3
-0.0
growth on ypd
YPD
+0.3
-0.1
+0.2
+0.1
+0.3
auxotrophy
Dropout Complete
+1.0
+0.0
-0.0
-0.1
+0.3
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