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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15248 and 15249 are separated by 431 nucleotides
15249 and 15250 are separated by 418 nucleotides
15250 and 15251 are separated by 690 nucleotides
15251 and 15252 are separated by 281 nucleotides
mRNA_6880: 15248 - K00641 metX homoserine O-acetyltransferase, at 342,593 to 344,205
15248
mRNA_6881: 15249 - Hypothetical Protein, at 344,637 to 347,114
15249
mRNA_6882: 15250 - Hypothetical Protein, at 347,533 to 348,159
15250
mRNA_6883: 15251 - BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308], at 348,850 to 350,156
15251
mRNA_6884: 15252 - K00943 tmk, DTYMK dTMP kinase, at 350,438 to 351,511
15252
Group
Condition
mRNA
_6880
mRNA
_6881
mRNA
_6882
mRNA
_6883
mRNA
_6884
15248
15249
15250
15251
15252
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.4
+0.0
+0.9
-0.8
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
+0.1
+0.3
-0.3
N.D.
auxotrophy
YNB Glucose
-2.3
+0.1
+0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-2.2
-0.0
+0.6
+0.2
N.D.
growth on oleic acid
YNB Glucose
-1.5
+0.0
-0.4
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
-0.1
+0.5
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-2.0
+0.0
+0.6
+1.1
N.D.
growth on ypd
YPD
+0.3
+0.1
-0.7
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
-0.3
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.8
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
+0.2
+0.7
+2.0
N.D.
auxotrophy
Dropout Complete
+0.3
+0.0
-0.2
+0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
+0.8
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.2
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
-0.2
+1.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.0
+0.5
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.9
+0.4
+0.5
+2.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+1.2
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
+0.1
+1.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
-0.1
+0.7
+0.8
N.D.
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