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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15249 and 15250 are separated by 418 nucleotides
15250 and 15251 are separated by 690 nucleotides
15251 and 15252 are separated by 281 nucleotides
15252 and 15253 are separated by 102 nucleotides
mRNA_6881: 15249 - Hypothetical Protein, at 344,637 to 347,114
15249
mRNA_6882: 15250 - Hypothetical Protein, at 347,533 to 348,159
15250
mRNA_6883: 15251 - BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308], at 348,850 to 350,156
15251
mRNA_6884: 15252 - K00943 tmk, DTYMK dTMP kinase, at 350,438 to 351,511
15252
mRNA_6885: 15253 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 351,614 to 354,932
15253
Group
Condition
mRNA
_6881
mRNA
_6882
mRNA
_6883
mRNA
_6884
mRNA
_6885
15249
15250
15251
15252
15253
growth on ypd
YPD
+0.1
-0.7
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.3
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.9
-0.8
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
+0.3
N.D.
+0.1
auxotrophy
Dropout Complete
+0.0
-0.2
+0.5
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.0
-0.4
+0.7
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.5
+0.5
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.8
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose
+0.1
+0.0
+0.4
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.8
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.6
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.6
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.5
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.7
+0.8
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.2
+0.4
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
+1.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+1.3
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
+0.6
+1.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.5
+2.4
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.7
+2.0
N.D.
+0.1
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