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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15250 and 15251 are separated by 690 nucleotides
15251 and 15252 are separated by 281 nucleotides
15252 and 15253 are separated by 102 nucleotides
15253 and 15254 are separated by 1312 nucleotides
mRNA_6882: 15250 - Hypothetical Protein, at 347,533 to 348,159
15250
mRNA_6883: 15251 - BLAST similar to An03g02750 [Aspergillus kawachii IFO 4308], at 348,850 to 350,156
15251
mRNA_6884: 15252 - K00943 tmk, DTYMK dTMP kinase, at 350,438 to 351,511
15252
mRNA_6885: 15253 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 351,614 to 354,932
15253
mRNA_6886: 15254 - K09493 CCT1, TCP1 T-complex protein 1 subunit alpha, at 356,245 to 358,443
15254
Group
Condition
mRNA
_6882
mRNA
_6883
mRNA
_6884
mRNA
_6885
mRNA
_6886
15250
15251
15252
15253
15254
growth on ypd
YPD
-0.7
+0.3
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.3
N.D.
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
-0.8
N.D.
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.3
N.D.
+0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.5
N.D.
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.7
N.D.
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.8
-0.2
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose
+0.0
+0.4
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.5
N.D.
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.0
N.D.
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.6
N.D.
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.2
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.3
N.D.
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+1.3
N.D.
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+1.3
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+0.8
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
+0.4
N.D.
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.6
+1.1
N.D.
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+2.4
N.D.
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+2.0
N.D.
+0.1
N.D.
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