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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15252 and 15253 are separated by 102 nucleotides
15253 and 15254 are separated by 1312 nucleotides
15254 and 15255 are separated by 200 nucleotides
15255 and 15256 are separated by 232 nucleotides
mRNA_6884: 15252 - K00943 tmk, DTYMK dTMP kinase, at 350,438 to 351,511
15252
mRNA_6885: 15253 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 351,614 to 354,932
15253
mRNA_6886: 15254 - K09493 CCT1, TCP1 T-complex protein 1 subunit alpha, at 356,245 to 358,443
15254
mRNA_6887: 15255 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 358,644 to 359,526
15255
mRNA_6888: 15256 - K04422 MAP3K13, LZK mitogen-activated protein kinase kinase kinase 13, at 359,759 to 363,523
15256
Group
Condition
mRNA
_6884
mRNA
_6885
mRNA
_6886
mRNA
_6887
mRNA
_6888
15252
15253
15254
15255
15256
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
+0.0
-1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
N.D.
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
N.D.
+0.4
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
N.D.
+0.2
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
N.D.
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.4
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
+0.2
-0.4
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose
N.D.
+0.2
N.D.
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
N.D.
-0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
+0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
N.D.
-0.3
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
N.D.
-0.3
+0.0
growth on ypd
YPD
N.D.
-0.0
N.D.
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
N.D.
-0.0
+0.3
auxotrophy
Dropout Complete
N.D.
+0.1
N.D.
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
+0.5
+0.1
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