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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15257 and 15258 are separated by 702 nucleotides
15258 and 15259 are separated by 106 nucleotides
15259 and 15260 are separated by 535 nucleotides
15260 and 15261 are separated by 325 nucleotides
mRNA_6889: 15257 - K17065 DNM1L dynamin 1-like protein, at 364,003 to 366,716
15257
mRNA_6890: 15258 - K09496 CCT4 T-complex protein 1 subunit delta, at 367,419 to 369,510
15258
mRNA_6891: 15259 - KOG2104 Nuclear transport factor 2, at 369,617 to 370,677
15259
mRNA_6892: 15260 - Hypothetical Protein, at 371,213 to 372,518
15260
mRNA_6893: 15261 - Hypothetical Protein, at 372,844 to 373,603
15261
Group
Condition
mRNA
_6889
mRNA
_6890
mRNA
_6891
mRNA
_6892
mRNA
_6893
15257
15258
15259
15260
15261
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
+0.4
-0.5
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.4
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.7
+0.8
growth on ypd
YPD
N.D.
N.D.
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.2
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.3
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.6
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.4
+0.7
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