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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15262 and 15263 are separated by 247 nucleotides
15263 and 15264 are separated by 1353 nucleotides
15264 and 15265 are separated by 620 nucleotides
15265 and 15266 are separated by 410 nucleotides
mRNA_6894: 15262 - K14326 UPF1, RENT1 regulator of nonsense transcripts 1, at 375,267 to 378,241
15262
mRNA_6895: 15263 - K18183 COX19 cytochrome c oxidase assembly protein subunit 19, at 378,489 to 378,951
15263
mRNA_6896: 15264 - KOG1399 Flavin-containing monooxygenase, at 380,305 to 381,908
15264
mRNA_6897: 15265 - Hypothetical Protein, at 382,529 to 383,336
15265
mRNA_6898: 15266 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,SUPERFAMILY--SSF52833, at 383,747 to 384,768
15266
Group
Condition
mRNA
_6894
mRNA
_6895
mRNA
_6896
mRNA
_6897
mRNA
_6898
15262
15263
15264
15265
15266
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-0.2
-0.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
+0.2
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.5
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
+0.4
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.4
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.2
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.1
+0.4
growth on ypd
YPD
N.D.
N.D.
+0.8
+0.6
-0.2
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