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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15264 and 15265 are separated by 620 nucleotides
15265 and 15266 are separated by 410 nucleotides
15266 and 15267 are separated by 301 nucleotides
15267 and 15268 are separated by 561 nucleotides
mRNA_6896: 15264 - KOG1399 Flavin-containing monooxygenase, at 380,305 to 381,908
15264
mRNA_6897: 15265 - Hypothetical Protein, at 382,529 to 383,336
15265
mRNA_6898: 15266 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,SUPERFAMILY--SSF52833, at 383,747 to 384,768
15266
mRNA_6899: 15267 - K01130 E3.1.6.1, aslA arylsulfatase, at 385,070 to 387,138
15267
mRNA_6900: 15268 - KOG0254 Predicted transporter (major facilitator superfamily), at 387,700 to 389,910
15268
Group
Condition
mRNA
_6896
mRNA
_6897
mRNA
_6898
mRNA
_6899
mRNA
_6900
15264
15265
15266
15267
15268
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.4
+0.2
-0.8
-0.3
auxotrophy
Dropout Complete
-0.1
+0.2
-0.6
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.0
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-0.4
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.2
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
+0.1
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
+0.0
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-0.2
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.4
-0.7
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.7
+0.2
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.4
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.0
-0.3
+0.7
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-0.0
+0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.5
-0.3
-0.2
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.1
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.4
+0.1
-0.1
+0.2
auxotrophy
YNB Glucose
+0.1
+0.2
-0.1
+0.3
+0.1
growth on oleic acid
YNB Glucose
+0.4
+0.2
+0.1
+0.1
+0.1
growth on ypd
YPD
+0.8
+0.6
-0.2
+0.4
-0.0
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