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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15265 and 15266 are separated by 410 nucleotides
15266 and 15267 are separated by 301 nucleotides
15267 and 15268 are separated by 561 nucleotides
15268 and 15269 are separated by 290 nucleotides
mRNA_6897: 15265 - Hypothetical Protein, at 382,529 to 383,336
15265
mRNA_6898: 15266 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,SUPERFAMILY--SSF52833, at 383,747 to 384,768
15266
mRNA_6899: 15267 - K01130 E3.1.6.1, aslA arylsulfatase, at 385,070 to 387,138
15267
mRNA_6900: 15268 - KOG0254 Predicted transporter (major facilitator superfamily), at 387,700 to 389,910
15268
mRNA_6901: 15269 - HMMPfam-DASH complex subunit Dad2-PF08654, at 390,201 to 390,814
15269
Group
Condition
mRNA
_6897
mRNA
_6898
mRNA
_6899
mRNA
_6900
mRNA
_6901
15265
15266
15267
15268
15269
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.8
-0.3
N.D.
auxotrophy
Dropout Complete
+0.2
-0.6
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.3
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.3
+0.7
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
+0.5
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.2
+0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.7
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.0
+0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.0
+0.4
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.4
-0.0
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.6
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
+0.3
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
+0.1
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.7
+0.2
-0.6
N.D.
auxotrophy
YNB Glucose
+0.2
-0.1
+0.3
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.1
-0.1
+0.2
N.D.
growth on ypd
YPD
+0.6
-0.2
+0.4
-0.0
N.D.
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