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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15271 and 15272 are separated by 227 nucleotides
15272 and 15273 are separated by 235 nucleotides
15273 and 15274 are separated by 346 nucleotides
15274 and 15275 are separated by 159 nucleotides
mRNA_6903: 15271 - Hypothetical Protein, at 393,744 to 394,954
15271
mRNA_6904: 15272 - HMMPfam-CTLH/CRA C-terminal to LisH motif domain-PF10607,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-CT11-RanBPM-SM00757, at 395,182 to 396,886
15272
mRNA_6905: 15273 - K14300 NUP133 nuclear pore complex protein Nup133, at 397,122 to 402,305
15273
mRNA_6906: 15274 - Hypothetical Protein, at 402,652 to 403,078
15274
mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403,238 to 404,908
15275
Group
Condition
mRNA
_6903
mRNA
_6904
mRNA
_6905
mRNA
_6906
mRNA
_6907
15271
15272
15273
15274
15275
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
-1.9
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.4
-2.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-2.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.3
-0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-0.9
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-1.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.2
-0.7
N.D.
N.D.
auxotrophy
YNB Glucose
-0.6
+0.1
-0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.2
-0.7
N.D.
N.D.
auxotrophy
Dropout Complete
-0.4
+0.5
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.1
-1.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.3
-0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.2
-0.9
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.2
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.4
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.0
+1.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.9
N.D.
N.D.
growth on ypd
YPD
-0.8
+0.5
+1.6
N.D.
N.D.
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